Nanoinformatics: developing new computing applications for nanomedicine

Nanoinformatics has recently emerged to address the need of computing applications at the nano level. In this regard, the authors have participated in various initiatives to identify its concepts, foundations and challenges. While nanomaterials open up the possibility for developing new devices in many industrial and scientific areas, they also offer breakthrough perspectives for the prevention, diagnosis and treatment of diseases. In this paper, we analyze the different aspects of nanoinformatics and suggest five research topics to help catalyze new research and development in the area, particularly focused on nanomedicine. We also encompass the use of informatics to further the biological and clinical applications of basic research in nanoscience and nanotechnology, and the related concept of an extended ?nanotype? to coalesce information related to nanoparticles. We suggest how nanoinformatics could accelerate developments in nanomedicine, similarly to what happened with the Human Genome and other -omics projects, on issues like exchanging modeling and simulation methods and tools, linking toxicity information to clinical and personal databases or developing new approaches for scientific ontologies, among many others.

Nanoinformatics: a new area of research in nanomedicine

Over a decade ago, nanotechnologists began research on applications of nanomaterials for medicine. This research has revealed a wide range of different challenges, as well as many opportunities. Some of these challenges are strongly related to informatics issues, dealing, for instance, with the management and integration of heterogeneous information, defining nomenclatures, taxonomies and classifications for various types of nanomaterials, and research on new modeling and simulation techniques for nanoparticles. Nanoinformatics has recently emerged in the USA and Europe to address these issues. In this paper, we present a review of nanoinformatics, describing its origins, the problems it addresses, areas of interest, and examples of current research initiatives and informatics resources. We suggest that nanoinformatics could accelerate research and development in nanomedicine, as has occurred in the past in other fields. For instance, biomedical informatics served as a fundamental catalyst for the Human Genome Project, and other genomic and ?omics projects, as well as the translational efforts that link resulting molecular-level research to clinical problems and findings.

Nanoinformatics knowledge infrastructures: bringing efficient information management to nanomedical research

Nanotechnology represents an area of particular promise and significant opportunity across multiple scientific disciplines. Ongoing nanotechnology research ranges from the characterization of nanoparticles and nanomaterials to the analysis and processing of experimental data seeking correlations between nanoparticles and their functionalities and side effects. Due to their special properties, nanoparticles are suitable for cellular-level diagnostics and therapy, offering numerous applications in medicine, e.g. development of biomedical devices, tissue repair, drug delivery systems and biosensors. In nanomedicine, recent studies are producing large amounts of structural and property data, highlighting the role for computational approaches in information management. While in vitro and in vivo assays are expensive, the cost of computing is falling. Furthermore, improvements in the accuracy of computational methods (e.g. data mining, knowledge discovery, modeling and simulation) have enabled effective tools to automate the extraction, management and storage of these vast data volumes. Since this information is widely distributed, one major issue is how to locate and access data where it resides (which also poses data-sharing limitations). The novel discipline of nanoinformatics addresses the information challenges related to nanotechnology research. In this paper, we summarize the needs and challenges in the field and present an overview of extant initiatives and efforts.

Caracterización de nanopartículas magnéticas y de oro para posibles aplicaciones biomédicas en diagnóstico y terapia

Los nanomateriales han adquirido recientemente un gran interés debido a la gran variedad de aplicaciones que pueden llegar a tener en el ámbito de la biomedicina. Este trabajo recoge las posibilidades tanto diagnósticas como terapéuticas que presentan dos modalidades de nanomateriales: nanopartículas de óxido de hierro y nanopartículas de oro. Para ello, en una primera aproximación se ha llevado a cabo la caracterización de las nanopartículas desde el punto de vista de la biocompatibilidad asociada a su tamaño y al tiempo de contacto o circulación en células y tejidos, ensayada tanto in vitro como in vivo así como la cinética de acumulación de dichas nanopartículas en el organismo vivo. Posteriormente se ha realizado la biofuncionalización de los dos tipos de nanopartículas para reconocer dianas moleculares específicas y poder ser utilizadas en el futuro en dos aplicaciones biomédicas diferentes: diagnóstico de enfermedad de Alzheimer mediante imagen de resonancia magnética y destrucción selectiva de células tumorales mediante hipertermia óptica. ABSTRACT Nanomaterials have recently gained a great interest due to the variety of applications that can have in the field of biomedicine. This work covers both diagnostic and therapeutic possibilities that present two types of nanomaterials: iron oxide nanoparticles and gold nanoparticles. Therefore, in a first approximation it has performed the characterizing of nanoparticles from the standpoint of biocompatibility associated with their size and time of contact or movement in cells and tissues, tested both in vitro and in vivo as well as the kinetics of accumulation of the nanoparticles into the living organism. Subsequently the biofunctionalization of two types of nanoparticles was made to recognize specific molecular targets and can be used in the future in two different biomedical applications: diagnosis of Alzheimer's disease by magnetic resonance imaging and selective destruction of tumor cells by optical hyperthermia.

A machine learning approach to identify clinical trials involving nanodrugs and nanodevices from ClinicalTrials.gov

BACKGROUND: Clinical Trials (CTs) are essential for bridging the gap between experimental research on new drugs and their clinical application. Just like CTs for traditional drugs and biologics have helped accelerate the translation of biomedical findings into medical practice, CTs for nanodrugs and nanodevices could advance novel nanomaterials as agents for diagnosis and therapy. Although there is publicly available information about nanomedicine-related CTs, the online archiving of this information is carried out without adhering to criteria that discriminate between studies involving nanomaterials or nanotechnology-based processes (nano), and CTs that do not involve nanotechnology (non-nano). Finding out whether nanodrugs and nanodevices were involved in a study from CT summaries alone is a challenging task. At the time of writing, CTs archived in the well-known online registry ClinicalTrials.gov are not easily told apart as to whether they are nano or non-nano CTs-even when performed by domain experts, due to the lack of both a common definition for nanotechnology and of standards for reporting nanomedical experiments and results. METHODS: We propose a supervised learning approach for classifying CT summaries from ClinicalTrials.gov according to whether they fall into the nano or the non-nano categories. Our method involves several stages: i) extraction and manual annotation of CTs as nano vs. non-nano, ii) pre-processing and automatic classification, and iii) performance evaluation using several state-of-the-art classifiers under different transformations of the original dataset. RESULTS AND CONCLUSIONS: The performance of the best automated classifier closely matches that of experts (AUC over 0.95), suggesting that it is feasible to automatically detect the presence of nanotechnology products in CT summaries with a high degree of accuracy. This can significantly speed up the process of finding whether reports on ClinicalTrials.gov might be relevant to a particular nanoparticle or nanodevice, which is essential to discover any precedents for nanotoxicity events or advantages for targeted drug therapy.

Electrical model for characterizing CVD graphene

Due to its extremely small thickness (0.35 nm), graphene is an intrinsic 2D nanomaterial. As in many other nanomaterials, its unique properties are derived from its exceptional dimensions. One of these properties is its linear dispersion equation that implies charge carriers with extraordinary high mobility. Therefore, the electronic properties of the material can lead to a big improvement in the performance of known electronic devices, or even result in novel devices for a post-silicon era.

Influencia de la adición de nanosílice y microsílice en el comportamiento mecánico, microestructural y durable de un hormigón autocompactante

Desde mediados de la década de los 80 se está investigando sobre el hormigón autocompactante. Cada día, su uso en el mundo de la construcción es más común debido a sus numerosas ventajas como su excelente fluidez ya que puede fluir bajo su propio peso y llenar encofrados con formas complicadas y muy armados sin necesidad de compactaciones internas o externas. Por otra parte, la búsqueda de materiales más resistentes y duraderos, ha dado lugar a la incorporación de adiciones en materiales a base de cemento. En las últimas dos décadas, los ensayos con los nanomateriales, ha experimentado un gran aumento. Los resultados hasta ahora obtenidos pueden asumir no sólo un aumento en la resistencia de estos materiales, pero un cambio es su funcionalidad. Estas nanopartículas, concretamente la nanosílice, no sólo mejoran sus propiedades mecánicas y especialmente sus propiedades durables, sino que pueden implicar un cambio sustancial en las condiciones de uso y en su ciclo de vida. Este trabajo tiene como principal objetivo el estudio de las propiedades mecánicas, características microestructurales y durables de un hormigón autocompactante cuando se le agrega como adición nanosílice, microsílice y mezcla binarias de ambas, como adición al cemento. Para ello se han realizado 10 mezclas de hormigón. Se utilizó como referencia un hormigón autocompactante obtenido con cemento, caliza, árido, aditivo modificador de viscosidad Se han fabricado tres hormigones con la misma dosificación pero con diferentes contenidos de nanosílice. 2,5%, 5% y 7,5% Tres dosificaciones con adición de microsílice 2,5%, 5% y 7,5% y las tres restantes con mezclas binarias de nanosílice y microsílice con respectivamente2,5%-2,5%, 5%-2,5% y 2,5%-5%, sobre el peso del cemento. El contenido de superplastificante se modificó para conseguir las características de autocompactabilidad. Para observar los efectos de las adiciones añadidas al hormigón, se realiza una extensa campaña experimental. En ella se evaluaron en primer lugar, las características de autocompactabilidad del material en estado fresco, mediante los ensayos prescritos en la Instrucción Española del hormigón estructural EHE 08. Las propiedades mecánicas fueron evaluadas con ensayos de resistencia a compresión, resistencia a tracción indirecta y módulo de elasticidad. Las características microestructurales fueron analizadas mediante porosimetría por intrusión de mercurio, el análisis termogravimétrico y la microscopía electrónica de barrido. Para el estudio de la capacidad durable de las mezclas se realizaron ensayos de resistividad eléctrica, migración de cloruros, difusión de cloruros, carbonatación acelerada, absorción capilar y resistencia al hielo-deshielo. Los resultados ponen de manifiesto que la acción de las adiciones genera mejoras en las propiedades resistentes del material. Así, la adición de nanosílice proporciona mayores resistencias a compresión que la microsílice, sin embargo las mezclas binarias con bajas proporciones de adición producen mayores resistencias. Por otra parte, se observó mediante la determinación de las relaciones de gel/portlandita, que las mezclas que contienen nanosílice tienen una mayor actividad puzolánica que las que contienen microsílice. En las mezclas binarias se obtuvo como resultado que mientras mayor es el contenido de nanosílice en la mezcla mayor es la actividad puzolánica. Unido a lo anteriormente expuesto, el estudio de la porosidad da como resultado que la adición de nanosílice genera un refinamiento del tamaño de los poros mientras que la adición de microsílice disminuye la cantidad de los mismos sin variar el tamaño de poro medio. Por su parte, en las micrografías, se visualizó la formación de cristales procedentes de la hidratación del cemento. En ellas, se pudo observar, que al adicionar nanosílice, la velocidad de hidratación aumenta al aumentar la formación de monosulfoaluminatos con escasa presencia de etringita. Mientras que en las mezclas con adición de microsílice se observan mayor cantidad de cristales de etringita, lo que confirma que la velocidad de hidratación en estos últimos fue menor. Mediante el estudio de los resultados de las pruebas de durabilidad, se observó que no hay diferencias significativas entre el coeficiente de migración de cloruros y el coeficiente de difusión de cloruros en hormigones con adición de nano o microsílice. Aunque este coeficiente es ligeramente menor en mezclas con adición de microsílice. Sin embargo, en las mezclas binarias de ambas adiciones se obtuvo valores de los coeficientes de difusión o migración de cloruros inferiores a los obtenidos en mezclas con una única adición. Esto se evidencia en los resultados de las pruebas de resistividad eléctrica, de difusión de cloruros y de migración de cloruros. Esto puede ser debido a la suma de los efectos que producen el nano y micro adiciones en la porosidad. El resultado mostró que nanosílice tiene un papel importante en la reducción de los poros y la microsílice disminuye el volumen total de ellos. Esto permite definir la vida útil de estos hormigones a valores muy superiores a los exigidos por la EHE-08, por lo que es posible reducir, de forma notable, el recubrimiento exigido en ambiente de alta agresividad asegurando un buen comportamiento en servicio. Por otra parte, la pérdida de masa debido a los ciclos de congelación-descongelación es significativamente menor en los hormigones que contienen nanosílice que los que contienen microsílice. Este resultado está de acuerdo con el ensayo de absorción capilar. De manera general, se puede concluir que son las mezclas binarias y más concretamente la mezcla con un 5% de nanosílice y 2,5% de microsílice la que presenta los mejores resultados tanto en su comportamiento resistente con en su comportamiento durable. Esto puede ser debido a que en estas mezclas la nanosílice se comporta como un núcleo de activación de las reacciones puzolánicas rodeado de partículas de mayor tamaño. Además, el extraordinario comportamiento durable puede deberse también a la continuidad en la curva granulométrica por la existencia de la microsílice, el filler calizo, el cemento, la arena y la gravilla con tamaños de partículas que garantice mezclas muy compactas que presentan elevadas prestaciones. Since the middle of the decade of the 80 is being investigated about self-consolidating concrete. Every day, its use in the world of construction is more common due to their numerous advantages as its excellent fluidity such that it can flow under its own weight and fill formworks with complicated shapes and congested reinforcement without need for internal or external compactions. Moreover, the search for more resistant and durable materials, has led to the incorporation of additions to cement-based materials. In the last two decades, trials with nanomaterials, has experienced a large increase. The results so far obtained can assume not only an increase in the resistance of these materials but a change is its functionality. These nano particles, particularly the nano silica, not only improve their mechanical properties and especially its durable properties, but that may imply a substantial change in the conditions of use and in their life cycle. This work has as its main objective the study of the mechanical properties, the microstructural characteristics and durability capacity in one self-compacting concrete, when added as addition to cement: nano silica, micro silica o binary mixtures of both. To this effect, 10 concrete mixes have been made. As reference one with a certain amount of cement, limestone filler, viscosity modifying additive and water/binder relation. Furthermore they were manufactured with the same dosage three mix with addition of 2.5%, 5% and 7.5% of nano silica by weight of cement. Other three with 2.5%, 5% and 7.5% of micro silica and the remaining three with binary mixtures of 2.5%-2.5%, 5%-2.5% and 2.5%-5% of silica nano-micro silica respectively, b weight of cement, varying only the amount of superplasticizer to obtain concrete with characteristics of self-compactability. To observe the effects of the additions added to the concrete, an extensive experimental campaign was performed. It assessed, first, the characteristics of self-compactability of fresh material through the tests prescribed in the Spanish Structural Instruction Concrete EHE 08. The mechanical properties were evaluated by compression strength tests, indirect tensile strength and modulus of elasticity. The microstructural properties were analyzed by mercury intrusion porosimetry, thermogravimetric analysis and scanning electron microscopy. To study the durability, were performed electrical resistivity tests, migration and diffusion of chlorides, accelerated carbonation, capillary suction and resistance to freeze-thaw cycles. The results show that the action of the additions generates improvements in the strength properties of the material. Specifically, the addition of nano silica provides greater resistance to compression that the mix with micro silica, however binary mixtures with low addition rates generate higher strengths. Moreover, it was observed by determining relationships gel/portlandite, that the pozzolanic activity in the mixtures with nano silica was higher than in the mixtures with micro silica. In binary mixtures it was found that the highest content of nano silica in the mix is the one with the highest pozzolanic activity. Together with the foregoing, the study of the porosity results in the mixture with addition of nano silica generates a refinement of pore size while adding micro silica decreases the amount thereof without changing the average pore size. On the other hand, in the micrographs, the formation of crystals of cement hydration was visualized. In them, it was observed that by adding nano silica, the speed of hydration increases with increasing formation monosulfoaluminatos with scarce presence of ettringite. While in mixtures with addition of micro silica, ettringite crystals are observed, confirming that the hydration speed was lower in these mixtures. By studying the results of durability testing, it observed that no significant differences between the coefficient of migration of chlorides and coefficient of diffusion of chlorides in concretes with addition of nano or micro silica. Although this coefficient is slightly lower in mixtures with addition of micro silica. However, in binary mixtures of both additions was obtained values of coefficients of difusion o migration of chlorides lower than those obtained in mixtures with one of the additions. This is evidenced by the results of the tests electrical resistivity, diffusion of chlorides and migration of chlorides. This may be due to the sum of the effects that produced the nano and micro additions in the porosity. The result showed that nano silica has an important role in the pores refining and the micro silica decreases the total volume of them. This allows defining the life of these concretes in values to far exceed those required by the EHE-08, making it possible to reduce, significantly, the coating required in highly aggressive environment and to guarantee good behavior in service. Moreover, the mass loss due to freeze-thaw cycles is significantly lower in concretes containing nano silica than those containing micro silica. This result agrees with the capillary absorption test. In general, one can conclude that the binary mixture and more specifically the mixture with 5% of nano silica and 2.5% silica fume is which presents the best results in its durable behavior. This may be because in these mixtures, the nano silica behaves as cores activation of pozzolanic reactions. In addition, the durable extraordinary behavior may also be due to the continuity of the grading curve due to existence of micro silica, limestone filler, cement, sand and gravel with particle sizes that guarantees very compact mixtures which have high performance.

Inorganic Photovoltaics - Planar and Nanostructured Devices

Since its invention in the 1950s, semiconductor solar cell technology has evolved in great leaps and bounds. Solar power is now being considered as a serious leading contender for replacing fossil fuel based power generation. This article reviews the evolution and current state, and potential areas of near future research focus, of leading inorganic materials based solar cells, including bulk crystalline, amorphous thin-films, and nanomaterials based solar cells. Bulk crystalline silicon solar cells continue to dominate the solar power market, and continued efforts at device fabrication improvements, and device topology advancements are discussed. III-V compound semiconductor materials on c-Si for solar power generation are also reviewed. Developments in thin-film based solar cells are reviewed, with a focus on amorphous silicon, copper zinc tin sulfide, cadmium telluride, as well as nanostructured Cadmium telluride. Recent developments in the use of nano-materials for solar power generation, including silicon and gallium arsenide nanowires, are also reviewed.